Welcome to PlaNet, a platform of web-tools dedicated to visualization and analysis of co-function networks of photosynthetic organisms.
PlaNet has been expanded with PhytoNet, which adds nine single-cellular, photosynthesizing organisms to the database.
Please visit the Help section for introduction to the concepts of the PlaNet platform.
To start using PlaNet, search the gene, cluster of genes or Mapman terms of interest using the options below.
1) Search the gene of interest by typing in gene identifier (e.g. Bradi3g50570, At3g03050) or keyword (e.g. kinase) into the box below.
PlaNet has been expanded with PhytoNet, which adds nine single-cellular, photosynthesizing organisms to the database.
Please visit the Help section for introduction to the concepts of the PlaNet platform.
To start using PlaNet, search the gene, cluster of genes or Mapman terms of interest using the options below.
1) Search the gene of interest by typing in gene identifier (e.g. Bradi3g50570, At3g03050) or keyword (e.g. kinase) into the box below.
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2) Find your gene by using nucleotide or protein sequence.
These tools are useful for:
1) Gene function prediction
2) Prioritizing genes for reverse genetic approach
3) Detecting functional homologues across species
4) Detecting conserved or multiplied pathways within and across plant species.
Major features of the platform include:
1) Gene specific pages containing information about: gene expression, functional associations between genes and function prediction
2) NetworkComparer, which permits comparative analysis of co-expression networks across the plant species
3) famNet database, that detects functional association between gene families/domains and detects duplicated gene modules and modules conserved across the plant species
4) ensembleNet database, that utilizes predictions from multiple inference methods to produce ensemble-based gene function prediction
1) Gene function prediction
2) Prioritizing genes for reverse genetic approach
3) Detecting functional homologues across species
4) Detecting conserved or multiplied pathways within and across plant species.
Major features of the platform include:
1) Gene specific pages containing information about: gene expression, functional associations between genes and function prediction
2) NetworkComparer, which permits comparative analysis of co-expression networks across the plant species
3) famNet database, that detects functional association between gene families/domains and detects duplicated gene modules and modules conserved across the plant species
4) ensembleNet database, that utilizes predictions from multiple inference methods to produce ensemble-based gene function prediction